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Index
A
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B
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C
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D
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E
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F
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G
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H
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I
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L
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M
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N
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O
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P
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R
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S
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T
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U
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V
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W
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Z
A
add_extract_dims() (in module dpipe.predict.shape)
add_margin() (in module dpipe.im.box)
animate3d() (in module dpipe.im.visualize)
append_dims() (in module dpipe.im.shape_utils)
apply() (in module dpipe.dataset.wrappers)
apply_along_axes() (in module dpipe.im.utils)
apply_at() (in module dpipe.batch_iter.utils)
apply_mask() (in module dpipe.dataset.wrappers)
assd() (in module dpipe.im.metrics)
Average (class in dpipe.im.grid)
B
broadcast_box() (in module dpipe.im.box)
build() (dpipe.im.grid.Average method)
(dpipe.im.grid.PatchCombiner method)
build_slices() (in module dpipe.im.utils)
bytescale() (in module dpipe.im.preprocessing)
C
cache_methods() (in module dpipe.dataset.wrappers)
cache_methods_to_disk() (in module dpipe.dataset.wrappers)
chain_decorators() (in module dpipe.predict.functional)
change_ids() (in module dpipe.dataset.wrappers)
CheckpointManager (in module dpipe.train.checkpoint)
Checkpoints (class in dpipe.train.checkpoint)
choose_existing() (in module dpipe.io)
close() (dpipe.batch_iter.pipeline.Infinite method)
collect() (in module dpipe.itertools)
combine() (in module dpipe.im.grid)
combine_batches() (in module dpipe.batch_iter.pipeline)
combine_pad() (in module dpipe.batch_iter.pipeline)
combine_to_arrays() (in module dpipe.batch_iter.pipeline)
composition() (in module dpipe.im.utils)
ConsistentSequential (class in dpipe.layers.structure)
ConsoleArguments (class in dpipe.io)
Constant (in module dpipe.train.policy)
convert_to_aggregated() (in module dpipe.im.metrics)
crop_to_box() (in module dpipe.im.shape_ops)
crop_to_shape() (in module dpipe.im.shape_ops)
cross_entropy_with_logits() (in module dpipe.im.metrics)
CSV (class in dpipe.dataset.csv)
D
Dataset (class in dpipe.dataset.base)
DecreasingOnPlateau (class in dpipe.train.policy)
default_clip() (in module dpipe.im.visualize)
describe_connected_components() (in module dpipe.im.preprocessing)
dice_loss() (in module dpipe.torch.functional)
dice_score() (in module dpipe.im.metrics)
divide() (in module dpipe.im.grid)
divisible_shape() (in module dpipe.predict.shape)
dmap() (in module dpipe.itertools)
dpipe.batch_iter
module
dpipe.batch_iter.expiration_pool
module
dpipe.batch_iter.pipeline
module
dpipe.batch_iter.sources
module
dpipe.batch_iter.utils
module
dpipe.commands
module
dpipe.dataset
module
dpipe.dataset.base
module
dpipe.dataset.csv
module
dpipe.dataset.wrappers
module
dpipe.experiment.flat
module
dpipe.im
module
dpipe.im.augmentation
module
dpipe.im.box
module
dpipe.im.dist
module
dpipe.im.grid
module
dpipe.im.hsv
module
dpipe.im.metrics
module
dpipe.im.patch
module
dpipe.im.preprocessing
module
dpipe.im.shape_ops
module
dpipe.im.shape_utils
module
dpipe.im.slices
module
dpipe.im.utils
module
dpipe.im.visualize
module
dpipe.io
module
dpipe.itertools
module
dpipe.layers.conv
module
dpipe.layers.fpn
module
dpipe.layers.resblock
module
dpipe.layers.shape
module
dpipe.layers.structure
module
dpipe.layout.base
module
dpipe.predict
module
dpipe.predict.functional
module
dpipe.predict.shape
module
dpipe.split
module
dpipe.split.cv
module
dpipe.torch
module
dpipe.torch.functional
module
dpipe.torch.model
module
dpipe.torch.utils
module
dpipe.train.checkpoint
module
dpipe.train.policy
module
E
EarlyStopping
elastic_transform() (in module dpipe.im.augmentation)
epoch_finished() (dpipe.train.policy.Policy method)
epoch_started() (dpipe.train.policy.Policy method)
evaluate_aggregated_metrics() (in module dpipe.commands)
evaluate_individual_metrics() (in module dpipe.commands)
expectation() (in module dpipe.im.dist)
expiration_pool() (in module dpipe.batch_iter.expiration_pool)
ExpirationPool (class in dpipe.batch_iter.expiration_pool)
Exponential (class in dpipe.train.policy)
extract() (in module dpipe.itertools)
extract_dims() (in module dpipe.im.shape_utils)
F
filter_mask() (in module dpipe.itertools)
Flat (class in dpipe.layout.base)
flatten() (in module dpipe.itertools)
focal_loss_with_logits() (in module dpipe.torch.functional)
focal_tversky_loss() (in module dpipe.torch.functional)
FPN (class in dpipe.layers.fpn)
fraction() (in module dpipe.im.metrics)
G
get() (dpipe.dataset.csv.CSV method)
get_box_padding() (in module dpipe.im.box)
get_boxes() (in module dpipe.im.grid)
get_centered_box() (in module dpipe.im.box)
get_containing_box() (in module dpipe.im.box)
get_device() (in module dpipe.torch.utils)
get_global_path() (dpipe.dataset.csv.CSV method)
get_greatest_component() (in module dpipe.im.preprocessing)
get_mask_volume() (in module dpipe.im.utils)
get_parameters() (in module dpipe.torch.utils)
get_random_box() (in module dpipe.im.patch)
get_random_patch() (in module dpipe.im.patch)
gray_image_bright_colored_mask() (in module dpipe.im.hsv)
gray_image_colored_mask() (in module dpipe.im.hsv)
group_train_val_test_split() (in module dpipe.split.cv)
H
has_batchnorm() (in module dpipe.torch.utils)
hausdorff_distance() (in module dpipe.im.metrics)
head_tail() (in module dpipe.itertools)
hsv_image() (in module dpipe.im.hsv)
I
ids (dpipe.dataset.base.Dataset attribute)
inference_step() (in module dpipe.torch.model)
Infinite (class in dpipe.batch_iter.pipeline)
insert_dims() (in module dpipe.im.shape_utils)
InterpolateToInput (class in dpipe.layers.shape)
iou() (in module dpipe.im.metrics)
iterate_axis() (in module dpipe.im.slices)
iterate_slices() (in module dpipe.im.slices)
Iterator (class in dpipe.batch_iter.pipeline)
L
Lambda (class in dpipe.layers.structure)
LambdaEpoch (class in dpipe.train.policy)
leave_group_out() (in module dpipe.split.cv)
limit_box() (in module dpipe.im.box)
linear_focal_loss_with_logits() (in module dpipe.torch.functional)
lmap() (in module dpipe.itertools)
load() (dpipe.dataset.csv.CSV method)
(in module dpipe.io)
load_by_random_id() (in module dpipe.batch_iter.sources)
load_csv() (in module dpipe.io)
load_from_folder() (in module dpipe.commands)
load_json() (in module dpipe.io)
load_model_state() (in module dpipe.torch.utils)
load_numpy() (in module dpipe.io)
load_or_create() (in module dpipe.io)
load_pickle() (in module dpipe.io)
load_text() (in module dpipe.io)
lock_dir() (in module dpipe.commands)
Loky (class in dpipe.batch_iter.pipeline)
M
make_box_() (in module dpipe.im.box)
make_chunks() (in module dpipe.itertools)
make_consistent_seq() (in module dpipe.layers.structure)
map_ids_to_disk() (in module dpipe.commands)
marginal_expectation() (in module dpipe.im.dist)
mask2bounding_box() (in module dpipe.im.box)
masked_loss() (in module dpipe.torch.functional)
masked_segmentation_probabilities() (in module dpipe.im.hsv)
merge() (in module dpipe.dataset.wrappers)
min_max_scale() (in module dpipe.im.preprocessing)
module
dpipe.batch_iter
dpipe.batch_iter.expiration_pool
dpipe.batch_iter.pipeline
dpipe.batch_iter.sources
dpipe.batch_iter.utils
dpipe.commands
dpipe.dataset
dpipe.dataset.base
dpipe.dataset.csv
dpipe.dataset.wrappers
dpipe.experiment.flat
dpipe.im
dpipe.im.augmentation
dpipe.im.box
dpipe.im.dist
dpipe.im.grid
dpipe.im.hsv
dpipe.im.metrics
dpipe.im.patch
dpipe.im.preprocessing
dpipe.im.shape_ops
dpipe.im.shape_utils
dpipe.im.slices
dpipe.im.utils
dpipe.im.visualize
dpipe.io
dpipe.itertools
dpipe.layers.conv
dpipe.layers.fpn
dpipe.layers.resblock
dpipe.layers.shape
dpipe.layers.structure
dpipe.layout.base
dpipe.predict
dpipe.predict.functional
dpipe.predict.shape
dpipe.split
dpipe.split.cv
dpipe.torch
dpipe.torch.functional
dpipe.torch.model
dpipe.torch.utils
dpipe.train.checkpoint
dpipe.train.policy
moveaxis() (in module dpipe.torch.functional)
multi_inference_step() (in module dpipe.torch.model)
multiply() (in module dpipe.batch_iter.utils)
N
negate_indices() (in module dpipe.itertools)
normalize() (in module dpipe.im.preprocessing)
O
optimizer_step() (in module dpipe.torch.model)
order_to_mode() (in module dpipe.torch.utils)
P
pad() (in module dpipe.im.shape_ops)
pad_batch_equal() (in module dpipe.batch_iter.utils)
pad_to_divisible() (in module dpipe.im.shape_ops)
pad_to_shape() (in module dpipe.im.shape_ops)
pam() (in module dpipe.itertools)
PatchCombiner (class in dpipe.im.grid)
patches_grid() (in module dpipe.predict.shape)
peek() (in module dpipe.itertools)
pmap() (in module dpipe.itertools)
Policy (class in dpipe.train.policy)
polynomial() (in module dpipe.im.dist)
populate() (in module dpipe.commands)
PostActivation (class in dpipe.layers.structure)
PostActivationND (class in dpipe.layers.conv)
postprocess() (in module dpipe.predict.functional)
PreActivation (class in dpipe.layers.structure)
PreActivationND (class in dpipe.layers.conv)
precision() (in module dpipe.im.metrics)
predict() (in module dpipe.commands)
prepend_dims() (in module dpipe.im.shape_utils)
preprocess() (in module dpipe.predict.functional)
proportional_zoom_to_shape() (in module dpipe.im.shape_ops)
Proxy (class in dpipe.dataset.wrappers)
PyramidPooling (class in dpipe.layers.shape)
R
random_apply() (in module dpipe.batch_iter.utils)
recall() (in module dpipe.im.metrics)
recursive_conditional_map() (in module dpipe.itertools)
ResBlock (class in dpipe.layers.resblock)
Reshape (class in dpipe.layers.shape)
restore() (dpipe.train.checkpoint.Checkpoints method)
restore_crop() (in module dpipe.im.shape_ops)
returns_box() (in module dpipe.im.box)
rgb_from_hsv_data() (in module dpipe.im.hsv)
S
sample() (in module dpipe.batch_iter.sources)
sample_args() (in module dpipe.batch_iter.utils)
sample_box_center_uniformly() (in module dpipe.im.patch)
save() (dpipe.train.checkpoint.Checkpoints method)
(in module dpipe.io)
save_csv() (in module dpipe.io)
save_json() (in module dpipe.io)
save_model_state() (in module dpipe.torch.utils)
save_numpy() (in module dpipe.io)
save_pickle() (in module dpipe.io)
save_text() (in module dpipe.io)
Schedule (class in dpipe.train.policy)
segmentation_probabilities() (in module dpipe.im.hsv)
sensitivity() (in module dpipe.im.metrics)
set_attributes() (in module dpipe.dataset.wrappers)
set_lr() (in module dpipe.torch.utils)
set_params() (in module dpipe.torch.utils)
shape_after_convolution() (in module dpipe.im.shape_utils)
shape_after_full_convolution() (in module dpipe.im.shape_utils)
slice3d() (in module dpipe.im.visualize)
Softmax (class in dpipe.layers.shape)
softmax() (in module dpipe.torch.functional)
specificity() (in module dpipe.im.metrics)
split() (in module dpipe.split.cv)
squeeze_first() (in module dpipe.itertools)
stack() (in module dpipe.itertools)
stratified_train_val_test_split() (in module dpipe.split.cv)
Switch (class in dpipe.train.policy)
T
Threads (class in dpipe.batch_iter.pipeline)
to_aggregated() (in module dpipe.im.metrics)
to_cuda() (in module dpipe.torch.utils)
to_device() (in module dpipe.torch.utils)
to_np() (in module dpipe.torch.utils)
to_var() (in module dpipe.torch.utils)
TQDM (class in dpipe.train.policy)
train_step() (in module dpipe.torch.model)
train_step_finished() (dpipe.train.policy.Policy method)
train_step_started() (dpipe.train.policy.Policy method)
train_val_test_split() (in module dpipe.split.cv)
transform() (in module dpipe.commands)
tversky_loss() (in module dpipe.torch.functional)
U
uniform() (in module dpipe.im.patch)
unpack_args() (in module dpipe.batch_iter.utils)
update() (dpipe.im.grid.Average method)
(dpipe.im.grid.PatchCombiner method)
V
validation_started() (dpipe.train.policy.Policy method)
value (dpipe.train.policy.ValuePolicy attribute)
ValuePolicy (class in dpipe.train.policy)
W
weighted_cross_entropy_with_logits() (in module dpipe.torch.functional)
weighted_sum() (in module dpipe.im.dist)
Z
zdict() (in module dpipe.itertools)
zip_apply() (in module dpipe.batch_iter.utils)
zip_equal() (in module dpipe.itertools)
zoom() (in module dpipe.im.shape_ops)
zoom_to_shape() (in module dpipe.im.shape_ops)
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